/EXTERNAL McGill EMC/mapping_coverage/K006179_1_lane_gembs
BACK
SAMPLE K006179_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1133759938 |
100% |
100377605856 |
100% |
| Mapped |
1123163508 |
99.07 % |
99317962856 |
98.94 % |
| Passed |
924167616 |
81.51 % |
79418373656 |
79.12 % |
| NotPassed |
198995892 |
17.55 % |
19899589200 |
19.82 % |
| |
|
|
|
|
| LowMAPQ |
183245856 |
16.16 % |
18324585600 |
18.26 % |
| MateUnmapped |
10596430 |
0.93 % |
1059643000 |
1.06 % |
| Duplicate |
3931015 |
0.35 % |
393101500 |
0.39 % |
| BadOrientation |
128 |
0.00 % |
12800 |
0.00 % |
| LargeInsertSize |
197524 |
0.02 % |
19752400 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11621369 |
1.03 % |
1162136900 |
1.16 % |
| Unmapped |
10596430 |
0.93 % |
1059643000 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
92400752000 |
100% |
| Passed |
74033978781 |
80.12 % |
| Trimmed |
4083986887 |
4.42 % |
| Clipped |
137568895 |
0.15 % |
| Overlapping |
12844809449 |
13.90 % |
| LowQuality |
1300407988 |
1.41 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |