/EXTERNAL McGill EMC/methylation/K006179_1_lane_gembs

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SAMPLE K006179_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26702885 21925743 82.11 %
NonRefCpG 261963 183740 70.14 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006179_1_lane_gembs_coverage_refCpG.png ./IMG//K006179_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006179_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006179_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006179_1_lane_gembs_quality_refcpg.png ./IMG//K006179_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006179_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5769779 10.99 % 3296498 7.15 % 45661 9.22 % 17132 4.37 %
Intermediate (0.3-0.7) 8606806 16.39 % 6843539 14.85 % 92032 18.58 % 59832 15.26 %
Methylated (0.7-1) 38127228 72.62 % 35951596 78.00 % 357574 72.20 % 315008 80.36 %
Median Methylation 0.850 0.870 0.840 0.870