/EXTERNAL McGill EMC/mapping_coverage/K006180_1_lane_gembs
BACK
SAMPLE K006180_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
954881362 |
100% |
86963638091 |
100% |
| Mapped |
937985552 |
98.23 % |
85274057091 |
98.06 % |
| Passed |
755146351 |
79.08 % |
66990136991 |
77.03 % |
| NotPassed |
182839201 |
19.15 % |
18283920100 |
21.02 % |
| |
|
|
|
|
| LowMAPQ |
142162152 |
14.89 % |
14216215200 |
16.35 % |
| MateUnmapped |
16895810 |
1.77 % |
1689581000 |
1.94 % |
| Duplicate |
26886472 |
2.82 % |
2688647200 |
3.09 % |
| BadOrientation |
66 |
0.00 % |
6600 |
0.00 % |
| LargeInsertSize |
125638 |
0.01 % |
12563800 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13664873 |
1.43 % |
1366487300 |
1.57 % |
| Unmapped |
16895810 |
1.77 % |
1689581000 |
1.94 % |
Base Level Counts
| Bases |
# |
% |
| Total |
75493573800 |
100% |
| Passed |
62536588532 |
82.84 % |
| Trimmed |
3414864221 |
4.52 % |
| Clipped |
99750353 |
0.13 % |
| Overlapping |
8403686456 |
11.13 % |
| LowQuality |
1038684238 |
1.38 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |