/EXTERNAL McGill EMC/methylation/K006180_1_lane_gembs

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SAMPLE K006180_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26681674 20316494 76.14 %
NonRefCpG 262591 172352 65.64 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006180_1_lane_gembs_coverage_refCpG.png ./IMG//K006180_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006180_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006180_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006180_1_lane_gembs_quality_refcpg.png ./IMG//K006180_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006180_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4913491 9.45 % 1945013 4.50 % 42030 8.49 % 15198 4.00 %
Intermediate (0.3-0.7) 10822573 20.82 % 7777610 17.98 % 114937 23.20 % 72921 19.20 %
Methylated (0.7-1) 36246350 69.73 % 33546280 77.53 % 338344 68.31 % 291738 76.80 %
Median Methylation 0.830 0.860 0.820 0.860