/EXTERNAL McGill EMC/methylation/K006181_1_lane_gembs

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SAMPLE K006181_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26677509 21567429 80.84 %
NonRefCpG 259320 177128 68.30 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006181_1_lane_gembs_coverage_refCpG.png ./IMG//K006181_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006181_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006181_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006181_1_lane_gembs_quality_refcpg.png ./IMG//K006181_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006181_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5712296 10.88 % 3507438 7.67 % 45688 9.31 % 18527 4.84 %
Intermediate (0.3-0.7) 11857805 22.59 % 9685553 21.17 % 124227 25.30 % 86810 22.68 %
Methylated (0.7-1) 34910855 66.52 % 32559985 71.16 % 321015 65.39 % 277414 72.48 %
Median Methylation 0.810 0.830 0.800 0.830