/EXTERNAL McGill EMC/K006182_1_lane_gembs

BACK

SAMPLE K006182_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 369661270 100.00 % 184830635 100.00 % 184830635 100.00 %
General Reads 358153997 96.89 % 179491913 97.11 % 178662084 96.66 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 92958 0.03 % 46648 0.03 % 46310 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11414315 3.09 % 5292074 2.86 % 6122241 3.31 %
Bisulfite_reads C2T 183542486 49.65 % 91985415 49.77 % 91557071 49.54 %
Bisulfite_reads G2A 174704469 47.26 % 87553146 47.37 % 87151323 47.15 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 145491310
Average Unique 78.72 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14396928036 38.56 % 6026323480 32.28 % 8370604556 44.84 %
Base Counts Overall C 4091647978 10.96 % 292428474 1.57 % 3799219504 20.35 %
Base Counts Overall G 4216085225 11.29 % 3892799240 20.85 % 323285985 1.73 %
Base Counts Overall T 14223127627 38.10 % 8268433090 44.29 % 5954694537 31.90 %
Base Counts Overall N 407999404 1.09 % 187909851 1.01 % 220089553 1.18 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9723653343265254
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 167991809



Mapping Quality

Mapping Quality Histogram
K006182_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006182_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0100.Bisulfite-Seq.DNA_Methylation.EGAX00001425207.release_6