/EXTERNAL McGill EMC/mapping_coverage/K006182_1_lane_gembs
BACK
SAMPLE K006182_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
356169182 |
100% |
31739703593 |
100% |
| Mapped |
352275556 |
98.91 % |
31350340993 |
98.77 % |
| Passed |
289339990 |
81.24 % |
25056784393 |
78.94 % |
| NotPassed |
62935566 |
17.67 % |
6293556600 |
19.83 % |
| |
|
|
|
|
| LowMAPQ |
57354092 |
16.10 % |
5735409200 |
18.07 % |
| MateUnmapped |
3893626 |
1.09 % |
389362600 |
1.23 % |
| Duplicate |
2004281 |
0.56 % |
200428100 |
0.63 % |
| BadOrientation |
46 |
0.00 % |
4600 |
0.00 % |
| LargeInsertSize |
3254 |
0.00 % |
325400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3573893 |
1.00 % |
357389300 |
1.13 % |
| Unmapped |
3893626 |
1.09 % |
389362600 |
1.23 % |
Base Level Counts
| Bases |
# |
% |
| Total |
28910825900 |
100% |
| Passed |
23286895624 |
80.55 % |
| Trimmed |
1297949141 |
4.49 % |
| Clipped |
39844738 |
0.14 % |
| Overlapping |
3814196769 |
13.19 % |
| LowQuality |
471939628 |
1.63 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |