/EXTERNAL McGill EMC/methylation/K006182_1_lane_gembs

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SAMPLE K006182_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26037618 5803436 22.29 %
NonRefCpG 323524 42297 13.07 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006182_1_lane_gembs_coverage_refCpG.png ./IMG//K006182_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006182_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006182_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006182_1_lane_gembs_quality_refcpg.png ./IMG//K006182_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006182_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5329987 11.31 % 524135 3.58 % 118560 20.33 % 10351 7.52 %
Intermediate (0.3-0.7) 14225120 30.19 % 3000007 20.49 % 183279 31.43 % 31223 22.69 %
Methylated (0.7-1) 27560591 58.50 % 11118232 75.93 % 281271 48.24 % 96014 69.78 %
Median Methylation 0.760 0.850 0.680 0.830