/EXTERNAL McGill EMC/K006184_1_lane_gembs

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SAMPLE K006184_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 540406264 100.00 % 270203132 100.00 % 270203132 100.00 %
General Reads 525351219 97.21 % 265648155 98.31 % 259703064 96.11 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 117210 0.02 % 59281 0.02 % 57929 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14937835 2.76 % 4495696 1.66 % 10442139 3.86 %
Bisulfite_reads C2T 268010742 49.59 % 135497807 50.15 % 132512935 49.04 %
Bisulfite_reads G2A 257457687 47.64 % 130209629 48.19 % 127248058 47.09 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 209621401
Average Unique 77.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 21397233412 39.20 % 9015636483 33.04 % 12381596929 45.37 %
Base Counts Overall C 5739197312 10.52 % 340990328 1.25 % 5398206984 19.78 %
Base Counts Overall G 5858743555 10.73 % 5461602896 20.01 % 397140659 1.46 %
Base Counts Overall T 21026941898 38.52 % 12198512662 44.70 % 8828429236 32.35 %
Base Counts Overall N 558916487 1.02 % 273773963 1.00 % 285142524 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9817794831148473
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 240964217



Mapping Quality

Mapping Quality Histogram
K006184_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006184_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0002.Bisulfite-Seq.DNA_Methylation.EGAX00001272802.fastq_MS000204