/EXTERNAL McGill EMC/mapping_coverage/K006184_1_lane_gembs
BACK
SAMPLE K006184_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
521802913 |
100% |
47409110659 |
100% |
| Mapped |
511853799 |
98.09 % |
46414199259 |
97.90 % |
| Passed |
415338642 |
79.60 % |
36762683559 |
77.54 % |
| NotPassed |
96515157 |
18.50 % |
9651515700 |
20.36 % |
| |
|
|
|
|
| LowMAPQ |
84226848 |
16.14 % |
8422684800 |
17.77 % |
| MateUnmapped |
9949114 |
1.91 % |
994911400 |
2.10 % |
| Duplicate |
3588058 |
0.69 % |
358805800 |
0.76 % |
| BadOrientation |
74 |
0.00 % |
7400 |
0.00 % |
| LargeInsertSize |
4442 |
0.00 % |
444200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8695735 |
1.67 % |
869573500 |
1.83 % |
| Unmapped |
9949114 |
1.91 % |
994911400 |
2.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
41507765100 |
100% |
| Passed |
33798899357 |
81.43 % |
| Trimmed |
1881255236 |
4.53 % |
| Clipped |
72031053 |
0.17 % |
| Overlapping |
4673050488 |
11.26 % |
| LowQuality |
1082528966 |
2.61 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |