/EXTERNAL McGill EMC/methylation/K006184_1_lane_gembs

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SAMPLE K006184_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26123920 10161630 38.90 %
NonRefCpG 298466 86234 28.89 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006184_1_lane_gembs_coverage_refCpG.png ./IMG//K006184_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006184_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006184_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006184_1_lane_gembs_quality_refcpg.png ./IMG//K006184_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006184_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5011074 10.35 % 773747 3.30 % 85073 15.63 % 11524 5.13 %
Intermediate (0.3-0.7) 12804728 26.45 % 4494998 19.15 % 151829 27.90 % 45366 20.18 %
Methylated (0.7-1) 30597194 63.20 % 18208393 77.56 % 307377 56.47 % 167862 74.69 %
Median Methylation 0.790 0.860 0.750 0.850