/EXTERNAL McGill EMC/K006186_1_lane_gembs

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SAMPLE K006186_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1004859052 100.00 % 502429526 100.00 % 502429526 100.00 %
General Reads 976481683 97.18 % 490144685 97.55 % 486336998 96.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 487040 0.05 % 244947 0.05 % 242093 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27890329 2.78 % 12039894 2.40 % 15850435 3.15 %
Bisulfite_reads C2T 501221009 49.88 % 251599482 50.08 % 249621527 49.68 %
Bisulfite_reads G2A 475747714 47.34 % 238790150 47.53 % 236957564 47.16 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 389601714
Average Unique 77.54 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39751262102 39.17 % 17200297615 33.90 % 22550964487 44.44 %
Base Counts Overall C 10590240145 10.43 % 730164834 1.44 % 9860075311 19.43 %
Base Counts Overall G 10852643525 10.69 % 10068664891 19.84 % 783978634 1.54 %
Base Counts Overall T 39194789947 38.62 % 22229376885 43.81 % 16965413062 33.43 %
Base Counts Overall N 1101828533 1.09 % 516877901 1.02 % 584950632 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9653435766170765
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 453475984



Mapping Quality

Mapping Quality Histogram
K006186_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006186_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0006.Bisulfite-Seq.DNA_Methylation.EGAX00001272825.fastq_MS000601