/EXTERNAL McGill EMC/mapping_coverage/K006186_1_lane_gembs
BACK
SAMPLE K006186_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
957443845 |
100% |
88433448139 |
100% |
| Mapped |
946177924 |
98.82 % |
87306856039 |
98.73 % |
| Passed |
746170928 |
77.93 % |
67306156439 |
76.11 % |
| NotPassed |
200006996 |
20.89 % |
20000699600 |
22.62 % |
| |
|
|
|
|
| LowMAPQ |
162926360 |
17.02 % |
16292636000 |
18.42 % |
| MateUnmapped |
11265921 |
1.18 % |
1126592100 |
1.27 % |
| Duplicate |
19229172 |
2.01 % |
1922917200 |
2.17 % |
| BadOrientation |
140 |
0.00 % |
14000 |
0.00 % |
| LargeInsertSize |
165732 |
0.02 % |
16573200 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17685592 |
1.85 % |
1768559200 |
2.00 % |
| Unmapped |
11265921 |
1.18 % |
1126592100 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
74581477900 |
100% |
| Passed |
62535639053 |
83.85 % |
| Trimmed |
3409951110 |
4.57 % |
| Clipped |
120809045 |
0.16 % |
| Overlapping |
7154512416 |
9.59 % |
| LowQuality |
1360566276 |
1.82 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |