/EXTERNAL McGill EMC/methylation/K006186_1_lane_gembs

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SAMPLE K006186_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26557972 16277839 61.29 %
NonRefCpG 272128 141128 51.86 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006186_1_lane_gembs_coverage_refCpG.png ./IMG//K006186_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006186_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006186_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006186_1_lane_gembs_quality_refcpg.png ./IMG//K006186_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006186_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5151851 10.12 % 1573644 4.39 % 59984 11.76 % 16775 5.12 %
Intermediate (0.3-0.7) 13097274 25.74 % 7526342 21.02 % 140688 27.57 % 73509 22.42 %
Methylated (0.7-1) 32642624 64.14 % 26711909 74.59 % 309594 60.67 % 237605 72.46 %
Median Methylation 0.800 0.850 0.780 0.840