/EXTERNAL McGill EMC/K006189_1_lane_gembs/McGill0028.Bisulfite-Seq.DNA_Methylation.EGAX00001272998.fastq_MS002801

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SAMPLE K006189_1_lane_gembs LANE McGill0028.Bisulfite-Seq.DNA_Methylation.EGAX00001272998.fastq_MS002801

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 918620832 100.00 % 459310416 100.00 % 459310416 100.00 %
General Reads 894827931 97.41 % 449760287 97.92 % 445067644 96.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 581995 0.06 % 292749 0.06 % 289246 0.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23210906 2.53 % 9257380 2.02 % 13953526 3.04 %
Bisulfite_reads C2T 459048458 49.97 % 230715297 50.23 % 228333161 49.71 %
Bisulfite_reads G2A 436361468 47.50 % 219337739 47.75 % 217023729 47.25 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 356301587
Average Unique 77.57 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 35979313855 38.78 % 15492659165 33.40 % 20486654690 44.16 %
Base Counts Overall C 10071065279 10.85 % 713191812 1.54 % 9357873467 20.17 %
Base Counts Overall G 10254678074 11.05 % 9479931368 20.44 % 774746706 1.67 %
Base Counts Overall T 35482494024 38.24 % 20240862682 43.63 % 15241631342 32.86 %
Base Counts Overall N 993152800 1.07 % 463706989 1.00 % 529445811 1.14 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9668531211188275
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 417220218



Mapping Quality

Mapping Quality Histogram
McGill0028.Bisulfite-Seq.DNA_Methylation.EGAX00001272998.fastq_MS002801.mapq.png



Read Length

Read Length Reads
100 459310416
100 459310416



Insert Size Plot

Insert Size Histogram
McGill0028.Bisulfite-Seq.DNA_Methylation.EGAX00001272998.fastq_MS002801.isize.png