/EXTERNAL McGill EMC/mapping_coverage/K006189_1_lane_gembs
BACK
SAMPLE K006189_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
886916099 |
100% |
80303590398 |
100% |
| Mapped |
875307886 |
98.69 % |
79142769098 |
98.55 % |
| Passed |
701794675 |
79.13 % |
61791447998 |
76.95 % |
| NotPassed |
173513211 |
19.56 % |
17351321100 |
21.61 % |
| |
|
|
|
|
| LowMAPQ |
153084550 |
17.26 % |
15308455000 |
19.06 % |
| MateUnmapped |
11608213 |
1.31 % |
1160821300 |
1.45 % |
| Duplicate |
7989345 |
0.90 % |
798934500 |
0.99 % |
| BadOrientation |
84 |
0.00 % |
8400 |
0.00 % |
| LargeInsertSize |
252064 |
0.03 % |
25206400 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12187168 |
1.37 % |
1218716800 |
1.52 % |
| Unmapped |
11608213 |
1.31 % |
1160821300 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
70157349500 |
100% |
| Passed |
57346371460 |
81.74 % |
| Trimmed |
3124184486 |
4.45 % |
| Clipped |
155334929 |
0.22 % |
| Overlapping |
8210566573 |
11.70 % |
| LowQuality |
1320892052 |
1.88 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |