/EXTERNAL McGill EMC/methylation/K006189_1_lane_gembs

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SAMPLE K006189_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26446835 17601924 66.56 %
NonRefCpG 274054 151179 55.16 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006189_1_lane_gembs_coverage_refCpG.png ./IMG//K006189_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006189_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006189_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006189_1_lane_gembs_quality_refcpg.png ./IMG//K006189_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006189_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4357445 8.58 % 1114272 2.95 % 52085 10.18 % 12632 3.67 %
Intermediate (0.3-0.7) 10482906 20.64 % 6155815 16.29 % 115166 22.50 % 58890 17.12 %
Methylated (0.7-1) 35938373 70.77 % 30508643 80.76 % 344569 67.32 % 272490 79.21 %
Median Methylation 0.840 0.870 0.820 0.870