/EXTERNAL McGill EMC/K006190_1_lane_gembs

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SAMPLE K006190_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 326017310 100.00 % 163008655 100.00 % 163008655 100.00 %
General Reads 304456211 93.39 % 152224144 93.38 % 152232067 93.39 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 350046 0.11 % 175412 0.11 % 174634 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21211053 6.51 % 10609099 6.51 % 10601954 6.50 %
Bisulfite_reads C2T 156782644 48.09 % 78404253 48.10 % 78378391 48.08 %
Bisulfite_reads G2A 148023613 45.40 % 73995303 45.39 % 74028310 45.41 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 113729698
Average Unique 69.77 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12304188616 37.37 % 5411338746 32.87 % 6892849870 41.87 %
Base Counts Overall C 4108773861 12.48 % 478457736 2.91 % 3630316125 22.05 %
Base Counts Overall G 4318377139 13.11 % 3773384493 22.92 % 544992646 3.31 %
Base Counts Overall T 11864393922 36.03 % 6637137665 40.31 % 5227256257 31.75 %
Base Counts Overall N 332014772 1.01 % 163555515 0.99 % 168459257 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9588168675542504
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 138878884



Mapping Quality

Mapping Quality Histogram
K006190_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006190_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0064.Bisulfite-Seq.DNA_Methylation.EGAX00001425168.release_6