/EXTERNAL McGill EMC/mapping_coverage/K006190_1_lane_gembs
BACK
SAMPLE K006190_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
299688635 |
100% |
26560665687 |
100% |
| Mapped |
295844314 |
98.72 % |
26176233587 |
98.55 % |
| Passed |
219883157 |
73.37 % |
18580117887 |
69.95 % |
| NotPassed |
75961157 |
25.35 % |
7596115700 |
28.60 % |
| |
|
|
|
|
| LowMAPQ |
65486856 |
21.85 % |
6548685600 |
24.66 % |
| MateUnmapped |
3844321 |
1.28 % |
384432100 |
1.45 % |
| Duplicate |
4863125 |
1.62 % |
486312500 |
1.83 % |
| BadOrientation |
52 |
0.00 % |
5200 |
0.00 % |
| LargeInsertSize |
9098 |
0.00 % |
909800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5602026 |
1.87 % |
560202600 |
2.11 % |
| Unmapped |
3844321 |
1.28 % |
384432100 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
21960909000 |
100% |
| Passed |
17371927760 |
79.10 % |
| Trimmed |
976576977 |
4.45 % |
| Clipped |
38305703 |
0.17 % |
| Overlapping |
3342485410 |
15.22 % |
| LowQuality |
231613150 |
1.05 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |