/EXTERNAL McGill EMC/methylation/K006190_1_lane_gembs

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SAMPLE K006190_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25716373 3761697 14.63 %
NonRefCpG 368946 25569 6.93 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006190_1_lane_gembs_coverage_refCpG.png ./IMG//K006190_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006190_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006190_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006190_1_lane_gembs_quality_refcpg.png ./IMG//K006190_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006190_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4938627 11.45 % 291015 3.40 % 151469 24.09 % 8040 9.76 %
Intermediate (0.3-0.7) 12890615 29.87 % 1611604 18.84 % 197977 31.49 % 18551 22.51 %
Methylated (0.7-1) 25321656 58.68 % 6650485 77.76 % 279348 44.43 % 55808 67.73 %
Median Methylation 0.760 0.860 0.640 0.830