/EXTERNAL McGill EMC/K006191_1_lane_gembs

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SAMPLE K006191_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 330656704 100.00 % 165328352 100.00 % 165328352 100.00 %
General Reads 322519050 97.54 % 161716910 97.82 % 160802140 97.26 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 138843 0.04 % 69607 0.04 % 69236 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7998811 2.42 % 3541835 2.14 % 4456976 2.70 %
Bisulfite_reads C2T 165203482 49.96 % 82832663 50.10 % 82370819 49.82 %
Bisulfite_reads G2A 157454411 47.62 % 78953854 47.76 % 78500557 47.48 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 135270340
Average Unique 81.82 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12946502224 38.77 % 5007304684 29.99 % 7939197540 47.55 %
Base Counts Overall C 3566592751 10.68 % 194610095 1.17 % 3371982656 20.19 %
Base Counts Overall G 3613102878 10.82 % 3411463354 20.43 % 201639524 1.21 %
Base Counts Overall T 12929778896 38.72 % 7916322761 47.41 % 5013456135 30.02 %
Base Counts Overall N 340350355 1.02 % 168462658 1.01 % 171887697 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9950077755275275
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 155115480



Mapping Quality

Mapping Quality Histogram
K006191_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006191_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0176.Bisulfite-Seq.DNA_Methylation.EGAX00001425277.release_6