/EXTERNAL McGill EMC/mapping_coverage/K006191_1_lane_gembs
BACK
SAMPLE K006191_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
320106044 |
100% |
27081209883 |
100% |
| Mapped |
317547525 |
99.20 % |
26825357983 |
99.06 % |
| Passed |
267918402 |
83.70 % |
21862445683 |
80.73 % |
| NotPassed |
49629123 |
15.50 % |
4962912300 |
18.33 % |
| |
|
|
|
|
| LowMAPQ |
43510620 |
13.59 % |
4351062000 |
16.07 % |
| MateUnmapped |
2558519 |
0.80 % |
255851900 |
0.94 % |
| Duplicate |
2425318 |
0.76 % |
242531800 |
0.90 % |
| BadOrientation |
28 |
0.00 % |
2800 |
0.00 % |
| LargeInsertSize |
1584 |
0.00 % |
158400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3691573 |
1.15 % |
369157300 |
1.36 % |
| Unmapped |
2558519 |
0.80 % |
255851900 |
0.94 % |
Base Level Counts
| Bases |
# |
% |
| Total |
26786421900 |
100% |
| Passed |
20418475902 |
76.23 % |
| Trimmed |
1152699661 |
4.30 % |
| Clipped |
31333600 |
0.12 % |
| Overlapping |
4892642617 |
18.27 % |
| LowQuality |
291270120 |
1.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |