/EXTERNAL McGill EMC/methylation/K006191_1_lane_gembs

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SAMPLE K006191_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26128412 3866826 14.80 %
NonRefCpG 322565 24106 7.47 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006191_1_lane_gembs_coverage_refCpG.png ./IMG//K006191_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006191_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006191_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006191_1_lane_gembs_quality_refcpg.png ./IMG//K006191_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006191_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7131829 14.58 % 470058 4.25 % 132454 22.26 % 4448 5.05 %
Intermediate (0.3-0.7) 15781747 32.26 % 2328137 21.07 % 198526 33.37 % 19152 21.72 %
Methylated (0.7-1) 26013733 53.17 % 8252843 74.68 % 264021 44.37 % 64560 73.23 %
Median Methylation 0.720 0.840 0.640 0.840