/EXTERNAL McGill EMC/methylation/K006192_1_lane_gembs

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SAMPLE K006192_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25856822 7525932 29.11 %
NonRefCpG 300109 59064 19.68 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006192_1_lane_gembs_coverage_refCpG.png ./IMG//K006192_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006192_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006192_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006192_1_lane_gembs_quality_refcpg.png ./IMG//K006192_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006192_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4693935 9.96 % 465284 2.63 % 84864 15.63 % 7414 4.51 %
Intermediate (0.3-0.7) 12854796 27.28 % 3245334 18.32 % 157036 28.92 % 32032 19.48 %
Methylated (0.7-1) 29572289 62.76 % 14004587 79.05 % 301019 55.44 % 124988 76.01 %
Median Methylation 0.790 0.860 0.740 0.850