Sample K006486_1_lane_gembs
===========================

Mapping Stats (Reads)
---------------------

+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           +============================================+============================================+===========================================+
|Sequenced Reads                             |3101723125                                  |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |2913316398                                  |93.93 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |8269655                                     |0.27 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |180137072                                   |5.81 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |1480842759                                  |47.74 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |1440743294                                  |46.45 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
----------------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |2448089140                                 |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |83.79 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
---------------------

+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                          |
+============================================+============================================+===========================================+
|Base Counts Overall A                       |94319083468                                 |30.07 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |2967321635                                  |0.95 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |67912806037                                 |21.65 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |140896579640                                |44.91 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |7601607087                                  |2.42 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
-------------------------

.. image:: K006486_1_lane_gembs_mapq.png

Bisulfite Conversion Rate
-------------------------

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9946390329215613                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Sample K006486_1_lane_gembs Lane SRX175354_14_lanes
---------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |3101723125                                  |100.00 %                                    |3101723125                                  |100.00 %                                    |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |2913316398                                  |93.93 %                                     |2913316398                                  |93.93 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |8269655                                     |0.27 %                                      |8269655                                     |0.27 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |180137072                                   |5.81 %                                      |180137072                                   |5.81 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |1480842759                                  |47.74 %                                     |1480842759                                  |47.74 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |1440743294                                  |46.45 %                                     |1440743294                                  |46.45 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |2448089140                                 |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |83.79 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |94319083468                                 |30.07 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |2967321635                                  |0.95 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |67912806037                                 |21.65 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |140896579640                                |44.91 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |7601607087                                  |2.42 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9946390329215613                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: SRX175354_14_lanes_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |423362242                                  |
+--------------------------------------------+-------------------------------------------+
|100                                         |2678360883                                 |
+--------------------------------------------+-------------------------------------------+

