/EXTERNAL Roadmap/mapping_coverage/K006486_1_lane_gembs
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SAMPLE K006486_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4696555105 |
100% |
290252285356 |
100% |
| Mapped |
4696555105 |
100.00 % |
290252285356 |
100.00 % |
| Passed |
3585565498 |
76.34 % |
248393502270 |
85.58 % |
| NotPassed |
1110989607 |
23.66 % |
41858783086 |
14.42 % |
| |
|
|
|
|
| LowMAPQ |
417970566 |
8.90 % |
41858783086 |
14.42 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
693019041 |
14.76 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
180483416061 |
100% |
| Passed |
166141846379 |
92.05 % |
| Trimmed |
8966937913 |
4.97 % |
| Clipped |
257489153 |
0.14 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
5117142616 |
2.84 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |