/EXTERNAL Roadmap/methylation/K006486_1_lane_gembs

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SAMPLE K006486_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26959913 23603236 87.55 %
NonRefCpG 238258 190310 79.88 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006486_1_lane_gembs_coverage_refCpG.png ./IMG//K006486_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006486_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006486_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006486_1_lane_gembs_quality_refcpg.png ./IMG//K006486_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006486_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7438269 13.97 % 6618464 13.79 % 43808 9.59 % 31074 7.98 %
Intermediate (0.3-0.7) 13603154 25.56 % 12248792 25.52 % 135611 29.70 % 114788 29.46 %
Methylated (0.7-1) 32189150 60.47 % 29123731 60.69 % 277220 60.71 % 243773 62.56 %
Median Methylation 0.780 0.780 0.770 0.790