/EXTERNAL Roadmap/K006487_K006488_2_lane_gembs

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SAMPLE K006487_K006488_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2874201694 100.00 % 1437100847 100.00 % 1437100847 100.00 %
General Reads 2760180341 96.03 % 1378476337 95.92 % 1381704004 96.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16150561 0.56 % 8066290 0.56 % 8084271 0.56 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 97870792 3.41 % 50558220 3.52 % 47312572 3.29 %
Bisulfite_reads C2T 1497329668 52.10 % 748011207 52.05 % 749318461 52.14 %
Bisulfite_reads G2A 1279001234 44.50 % 638531420 44.43 % 640469814 44.57 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 961869539
Average Unique 66.93 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 103345535352 35.04 % 44320008057 29.87 % 59025527295 40.27 %
Base Counts Overall C 42364225418 14.36 % 2542848784 1.71 % 39821376634 27.17 %
Base Counts Overall G 42742324906 14.49 % 40629719250 27.38 % 2112605656 1.44 %
Base Counts Overall T 102903645049 34.89 % 59167790586 39.87 % 43735854463 29.84 %
Base Counts Overall N 3621662993 1.23 % 1732740647 1.17 % 1888922346 1.29 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9916621417571089
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1297960154



Mapping Quality

Mapping Quality Histogram
K006487_K006488_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006487_K006488_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
SRX116603_8_lanes
SRX116604_7_lanes