/EXTERNAL Roadmap/K006487_K006488_2_lane_gembs/SRX116604_7_lanes
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1155602956 | 100.00 % | 577801478 | 100.00 % | 577801478 | 100.00 % |
| General Reads | 1111226935 | 96.16 % | 553366149 | 95.77 % | 557860786 | 96.55 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6170088 | 0.53 % | 3070886 | 0.53 % | 3099202 | 0.54 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 38205933 | 3.31 % | 21364443 | 3.70 % | 16841490 | 2.91 % |
| Bisulfite_reads C2T | 603998184 | 52.27 % | 300907807 | 52.08 % | 303090377 | 52.46 % |
| Bisulfite_reads G2A | 513398839 | 44.43 % | 255529228 | 44.22 % | 257869611 | 44.63 % |
| Concept | Value |
|---|---|
| Unique Fragments | 380365350 |
| Average Unique | 65.83 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 41296595244 | 34.82 % | 17839320863 | 29.90 % | 23457274381 | 39.80 % |
| Base Counts Overall C | 17278473450 | 14.57 % | 1044163176 | 1.75 % | 16234310274 | 27.55 % |
| Base Counts Overall G | 17395355484 | 14.67 % | 16520292125 | 27.69 % | 875063359 | 1.48 % |
| Base Counts Overall T | 41177011500 | 34.72 % | 23547145010 | 39.46 % | 17629866490 | 29.91 % |
| Base Counts Overall N | 1459731870 | 1.23 % | 720495618 | 1.21 % | 739236252 | 1.25 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9916643349395321 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 520494205 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 472706330 |
| 108 | 105095148 |
| 101 | 577801478 |
| Insert Size Histogram |
|---|
 |