/EXTERNAL Roadmap/mapping_coverage/K006487_K006488_2_lane_gembs
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SAMPLE K006487_K006488_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2323406708 |
100% |
230566662462 |
100% |
| Mapped |
2259403383 |
97.25 % |
224077550746 |
97.19 % |
| Passed |
1058679076 |
45.57 % |
101940428131 |
44.21 % |
| NotPassed |
1200724307 |
51.68 % |
122137122615 |
52.97 % |
| |
|
|
|
|
| LowMAPQ |
674674458 |
29.04 % |
68575755040 |
29.74 % |
| MateUnmapped |
64003325 |
2.75 % |
6498361502 |
2.82 % |
| Duplicate |
436865117 |
18.80 % |
44489671368 |
19.30 % |
| BadOrientation |
102 |
0.00 % |
10323 |
0.00 % |
| LargeInsertSize |
401536 |
0.02 % |
40911464 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
88783094 |
3.82 % |
9030774420 |
3.92 % |
| Unmapped |
64003325 |
2.75 % |
6489111716 |
2.81 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107657969021 |
100% |
| Passed |
94566929458 |
87.84 % |
| Trimmed |
4898055682 |
4.55 % |
| Clipped |
332621615 |
0.31 % |
| Overlapping |
5384919275 |
5.00 % |
| LowQuality |
2475442991 |
2.30 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |