/EXTERNAL Roadmap/methylation/K006487_K006488_2_lane_gembs
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SAMPLE K006487_K006488_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26895659 |
19656202 |
73.08 % |
| NonRefCpG |
413822 |
151567 |
36.63 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5950289 |
12.14 % |
3829405 |
9.54 % |
189718 |
26.43 % |
41318 |
11.14 % |
| Intermediate (0.3-0.7) |
8831614 |
18.01 % |
5776795 |
14.40 % |
180357 |
25.12 % |
72012 |
19.42 % |
| Methylated (0.7-1) |
34243218 |
69.85 % |
30523352 |
76.06 % |
347864 |
48.45 % |
257431 |
69.43 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.880 |
|
0.680 |
|
0.850 |
|