/EXTERNAL Roadmap/K006497_K006498_2_lane_gembs

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SAMPLE K006497_K006498_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2611758926 100.00 % 1305879463 100.00 % 1305879463 100.00 %
General Reads 2545169821 97.45 % 1276748019 97.77 % 1268421802 97.13 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4 0.00 % 2 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 66589101 2.55 % 29131442 2.23 % 37457659 2.87 %
Bisulfite_reads C2T 1335908393 51.15 % 670251650 51.33 % 665656743 50.97 %
Bisulfite_reads G2A 1209261432 46.30 % 606496371 46.44 % 602765061 46.16 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 983120206
Average Unique 75.28 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 92682998830 35.14 % 37176927740 28.19 % 55506071090 42.08 %
Base Counts Overall C 38664756854 14.66 % 2533536336 1.92 % 36131220518 27.39 %
Base Counts Overall G 38356151477 14.54 % 36119220985 27.39 % 2236930492 1.70 %
Base Counts Overall T 91257435140 34.60 % 54732418779 41.50 % 36525016361 27.69 %
Base Counts Overall N 2826309225 1.07 % 1331721923 1.01 % 1494587302 1.13 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1222365812



Mapping Quality

Mapping Quality Histogram
K006497_K006498_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006497_K006498_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
SRX259086_3_lanes
SRX259085_5_lanes