/EXTERNAL Roadmap/mapping_coverage/K006497_K006498_2_lane_gembs
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SAMPLE K006497_K006498_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2508780504 |
100% |
212755863298 |
100% |
| Mapped |
2483246690 |
98.98 % |
210202481898 |
98.80 % |
| Passed |
1919767617 |
76.52 % |
153854574598 |
72.32 % |
| NotPassed |
563479073 |
22.46 % |
56347907300 |
26.48 % |
| |
|
|
|
|
| LowMAPQ |
488310882 |
19.46 % |
48831088200 |
22.95 % |
| MateUnmapped |
25533814 |
1.02 % |
2553381400 |
1.20 % |
| Duplicate |
36445534 |
1.45 % |
3644553400 |
1.71 % |
| BadOrientation |
80 |
0.00 % |
8000 |
0.00 % |
| LargeInsertSize |
2860460 |
0.11 % |
286046000 |
0.13 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35862117 |
1.43 % |
3586211700 |
1.69 % |
| Unmapped |
25533814 |
1.02 % |
2553381400 |
1.20 % |
Base Level Counts
| Bases |
# |
% |
| Total |
191970558000 |
100% |
| Passed |
143753207887 |
74.88 % |
| Trimmed |
7686155712 |
4.00 % |
| Clipped |
834462541 |
0.43 % |
| Overlapping |
37281520861 |
19.42 % |
| LowQuality |
2415210999 |
1.26 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |