/EXTERNAL Roadmap/methylation/K006497_K006498_2_lane_gembs
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SAMPLE K006497_K006498_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26902248 |
20330022 |
75.57 % |
| NonRefCpG |
344302 |
155966 |
45.30 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5049629 |
10.12 % |
4203156 |
10.07 % |
109068 |
18.02 % |
26797 |
7.43 % |
| Intermediate (0.3-0.7) |
4872777 |
9.76 % |
3258857 |
7.81 % |
109230 |
18.05 % |
43723 |
12.12 % |
| Methylated (0.7-1) |
39982765 |
80.12 % |
34264530 |
82.12 % |
386919 |
63.93 % |
290318 |
80.46 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.900 |
|
0.910 |
|
0.840 |
|
0.900 |
|