/EXTERNAL Roadmap/mapping_coverage/K006502_K006503_K006504_K006505_4_lane_gembs
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SAMPLE K006502_K006503_K006504_K006505_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3600116015 |
100% |
323709442492 |
100% |
| Mapped |
3558257947 |
98.84 % |
319523635692 |
98.71 % |
| Passed |
2340714720 |
65.02 % |
197769312992 |
61.09 % |
| NotPassed |
1217543227 |
33.82 % |
121754322700 |
37.61 % |
| |
|
|
|
|
| LowMAPQ |
956441674 |
26.57 % |
95644167400 |
29.55 % |
| MateUnmapped |
41858068 |
1.16 % |
4185806800 |
1.29 % |
| Duplicate |
159516920 |
4.43 % |
15951692000 |
4.93 % |
| BadOrientation |
208 |
0.00 % |
20800 |
0.00 % |
| LargeInsertSize |
4896222 |
0.14 % |
489622200 |
0.15 % |
| |
|
|
|
|
| NotCorrectlyAligned |
96688203 |
2.69 % |
9668820300 |
2.99 % |
| Unmapped |
41858068 |
1.16 % |
4185806800 |
1.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
234055233500 |
100% |
| Passed |
185414081207 |
79.22 % |
| Trimmed |
9483472146 |
4.05 % |
| Clipped |
1288504143 |
0.55 % |
| Overlapping |
34997416365 |
14.95 % |
| LowQuality |
2871759639 |
1.23 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |