/EXTERNAL Roadmap/methylation/K006502_K006503_K006504_K006505_4_lane_gembs
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SAMPLE K006502_K006503_K006504_K006505_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27051121 |
20920981 |
77.34 % |
| NonRefCpG |
338720 |
163340 |
48.22 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5108960 |
9.76 % |
4478118 |
10.07 % |
115205 |
18.40 % |
29353 |
7.47 % |
| Intermediate (0.3-0.7) |
4355033 |
8.32 % |
3087322 |
6.94 % |
98042 |
15.66 % |
44005 |
11.21 % |
| Methylated (0.7-1) |
42893899 |
81.92 % |
36918327 |
82.99 % |
412787 |
65.94 % |
319354 |
81.32 % |
| |
|
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|
|
|
|
|
|
| Median Methylation |
0.900 |
|
0.900 |
|
0.850 |
|
0.900 |
|