/EXTERNAL Roadmap/methylation/K006516_K006517_K006518_K006519_K006520_5_lane_gembs
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SAMPLE K006516_K006517_K006518_K006519_K006520_5_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26817348 |
23890841 |
89.09 % |
| NonRefCpG |
143146 |
107502 |
75.10 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5735744 |
10.82 % |
5197675 |
10.77 % |
16494 |
6.06 % |
8964 |
4.00 % |
| Intermediate (0.3-0.7) |
8289392 |
15.63 % |
7489778 |
15.52 % |
49422 |
18.17 % |
37144 |
16.58 % |
| Methylated (0.7-1) |
38994567 |
73.55 % |
35577184 |
73.71 % |
206092 |
75.77 % |
177900 |
79.42 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.860 |
|
0.860 |
|
0.870 |
|