/EXTERNAL Roadmap/mapping_coverage/K006525_K006526_K006527_K006528_K006529_5_lane_gembs
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SAMPLE K006525_K006526_K006527_K006528_K006529_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3165117310 |
100% |
156532450640 |
100% |
| Mapped |
3165117310 |
100.00 % |
156532450640 |
100.00 % |
| Passed |
2477651929 |
78.28 % |
130029482849 |
83.07 % |
| NotPassed |
687465381 |
21.72 % |
26502967791 |
16.93 % |
| |
|
|
|
|
| LowMAPQ |
313624975 |
9.91 % |
26502967791 |
16.93 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
373840406 |
11.81 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
108710443822 |
100% |
| Passed |
88633784680 |
81.53 % |
| Trimmed |
5257972034 |
4.84 % |
| Clipped |
10734815199 |
9.87 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
4083871909 |
3.76 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |