/CEMT/A50423_A50425_4_lane_gembs

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SAMPLE A50423_A50425_4_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 379272442 100.00 % 189636221 100.00 % 189636221 100.00 %
General Reads 362677728 95.62 % 181766178 95.85 % 180911550 95.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1373296 0.36 % 687360 0.36 % 685936 0.36 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15221418 4.01 % 7182683 3.79 % 8038735 4.24 %
Bisulfite_reads C2T 186250645 49.11 % 93346918 49.22 % 92903727 48.99 %
Bisulfite_reads G2A 177800379 46.88 % 89106620 46.99 % 88693759 46.77 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 135320710
Average Unique 71.36 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 18803660445 39.35 % 8411282129 35.20 % 10392378316 43.49 %
Base Counts Overall C 4889524596 10.23 % 306522539 1.28 % 4583002057 19.18 %
Base Counts Overall G 5057026847 10.58 % 4675916805 19.57 % 381110042 1.59 %
Base Counts Overall T 18630498658 38.99 % 10304243752 43.12 % 8326254906 34.85 %
Base Counts Overall N 407617146 0.85 % 196198621 0.82 % 211418525 0.88 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9928962048493908
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 153917424



Mapping Quality

Mapping Quality Histogram
A50423_A50425_4_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A50423_A50425_4_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C6AH3ANXX_3_2
C6JC4ANXX_1_2