/CEMT/mapping_coverage/A50423_A50425_4_lane_gembs
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SAMPLE A50423_A50425_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
361477514 |
100% |
39373264743 |
100% |
| Mapped |
357851196 |
99.00 % |
38919974993 |
98.85 % |
| Passed |
268643917 |
74.32 % |
27769065118 |
70.53 % |
| NotPassed |
89207279 |
24.68 % |
11150909875 |
28.32 % |
| |
|
|
|
|
| LowMAPQ |
71502522 |
19.78 % |
8937815250 |
22.70 % |
| MateUnmapped |
3626318 |
1.00 % |
453289750 |
1.15 % |
| Duplicate |
1233297 |
0.34 % |
154162125 |
0.39 % |
| BadOrientation |
206 |
0.00 % |
25750 |
0.00 % |
| LargeInsertSize |
9840 |
0.00 % |
1230000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16461414 |
4.55 % |
2057676750 |
5.23 % |
| Unmapped |
3626318 |
1.00 % |
453289750 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
33542730250 |
100% |
| Passed |
26437405463 |
78.82 % |
| Trimmed |
1193229626 |
3.56 % |
| Clipped |
94622399 |
0.28 % |
| Overlapping |
5679042733 |
16.93 % |
| LowQuality |
138430029 |
0.41 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |