/cemt/A54774_3_lane_gembs

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SAMPLE A54774_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1569249404 100.00 % 784624702 100.00 % 784624702 100.00 %
General Reads 1494339333 95.23 % 747926561 95.32 % 746412772 95.13 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 49012695 3.12 % 24511865 3.12 % 24500830 3.12 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25897376 1.65 % 12186276 1.55 % 13711100 1.75 %
Bisulfite_reads C2T 789911914 50.34 % 395337524 50.39 % 394574390 50.29 %
Bisulfite_reads G2A 753440114 48.01 % 377100902 48.06 % 376339212 47.96 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 572310934
Average Unique 72.94 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 77838012083 39.37 % 36596212351 37.02 % 41241799732 41.72 %
Base Counts Overall C 20341175747 10.29 % 1022018430 1.03 % 19319157317 19.54 %
Base Counts Overall G 21051721777 10.65 % 19671347598 19.90 % 1380374179 1.40 %
Base Counts Overall T 76908523523 38.90 % 40774008402 41.24 % 36134515121 36.55 %
Base Counts Overall N 1585991774 0.80 % 799125671 0.81 % 786866103 0.80 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9892210562112838
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 660212524



Mapping Quality

Mapping Quality Histogram
A54774_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54774_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7NH5ANXX_3_1
C7JMAANXX_2_1
C7NH5ANXX_2_1