/cemt/mapping_coverage/A54774_3_lane_gembs
BACK
SAMPLE A54774_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1468570390 |
100% |
162278985271 |
100% |
| Mapped |
1454079047 |
99.01 % |
160467567396 |
98.88 % |
| Passed |
1058626680 |
72.09 % |
111036021521 |
68.42 % |
| NotPassed |
395452367 |
26.93 % |
49431545875 |
30.46 % |
| |
|
|
|
|
| LowMAPQ |
312031712 |
21.25 % |
39003964000 |
24.04 % |
| MateUnmapped |
14491343 |
0.99 % |
1811417875 |
1.12 % |
| Duplicate |
26468809 |
1.80 % |
3308601125 |
2.04 % |
| BadOrientation |
1062 |
0.00 % |
132750 |
0.00 % |
| LargeInsertSize |
46234 |
0.00 % |
5779250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
56904550 |
3.87 % |
7113068750 |
4.38 % |
| Unmapped |
14491343 |
0.99 % |
1811417875 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
132297143000 |
100% |
| Passed |
105665144296 |
79.87 % |
| Trimmed |
4732253495 |
3.58 % |
| Clipped |
446860612 |
0.34 % |
| Overlapping |
20814260867 |
15.73 % |
| LowQuality |
638623730 |
0.48 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |