/cemt/methylation/A54774_3_lane_gembs

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SAMPLE A54774_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26534975 14374382 54.17 %
NonRefCpG 364608 144593 39.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54774_3_lane_gembs_coverage_refCpG.png ./IMG//A54774_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54774_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54774_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54774_3_lane_gembs_quality_refcpg.png ./IMG//A54774_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54774_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5945226 12.01 % 1726072 5.48 % 145655 21.78 % 30902 8.69 %
Intermediate (0.3-0.7) 12306037 24.86 % 6041890 19.20 % 173494 25.95 % 73601 20.71 %
Methylated (0.7-1) 31255028 63.13 % 23707597 75.32 % 349514 52.27 % 250947 70.60 %
Median Methylation 0.800 0.850 0.720 0.840