/cemt/mapping_coverage/A54763_3_lane_gembs
BACK
SAMPLE A54763_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1265761271 |
100% |
137114365111 |
100% |
| Mapped |
1253477297 |
99.03 % |
135578868361 |
98.88 % |
| Passed |
859938813 |
67.94 % |
86386557861 |
63.00 % |
| NotPassed |
393538484 |
31.09 % |
49192310500 |
35.88 % |
| |
|
|
|
|
| LowMAPQ |
300949580 |
23.78 % |
37618697500 |
27.44 % |
| MateUnmapped |
12283974 |
0.97 % |
1535496750 |
1.12 % |
| Duplicate |
25795369 |
2.04 % |
3224421125 |
2.35 % |
| BadOrientation |
1530 |
0.00 % |
191250 |
0.00 % |
| LargeInsertSize |
72978 |
0.01 % |
9122250 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
66719027 |
5.27 % |
8339878375 |
6.08 % |
| Unmapped |
12283974 |
0.97 % |
1535496750 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107467363500 |
100% |
| Passed |
82061593718 |
76.36 % |
| Trimmed |
3775957675 |
3.51 % |
| Clipped |
343017325 |
0.32 % |
| Overlapping |
20737788314 |
19.30 % |
| LowQuality |
549006468 |
0.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |