/cemt/methylation/A54763_3_lane_gembs

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SAMPLE A54763_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26370713 12818905 48.61 %
NonRefCpG 366502 117661 32.10 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54763_3_lane_gembs_coverage_refCpG.png ./IMG//A54763_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54763_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54763_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54763_3_lane_gembs_quality_refcpg.png ./IMG//A54763_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54763_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5408806 11.15 % 1351759 4.78 % 166691 25.03 % 30196 9.83 %
Intermediate (0.3-0.7) 12891610 26.58 % 5697553 20.13 % 183254 27.52 % 68809 22.39 %
Methylated (0.7-1) 30196740 62.26 % 21253441 75.09 % 315924 47.45 % 208318 67.78 %
Median Methylation 0.790 0.850 0.670 0.820