/cemt/methylation/A54764_3_lane_gembs

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SAMPLE A54764_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26283759 12106311 46.06 %
NonRefCpG 407111 110304 27.09 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54764_3_lane_gembs_coverage_refCpG.png ./IMG//A54764_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54764_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54764_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54764_3_lane_gembs_quality_refcpg.png ./IMG//A54764_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54764_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5347922 11.22 % 1269984 4.78 % 211818 28.99 % 35523 11.75 %
Intermediate (0.3-0.7) 12634389 26.50 % 5203578 19.60 % 201295 27.55 % 68272 22.59 %
Methylated (0.7-1) 29690047 62.28 % 20080198 75.62 % 317635 43.47 % 198436 65.66 %
Median Methylation 0.790 0.850 0.620 0.810