/cemt/A54767_3_lane_gembs

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SAMPLE A54767_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1536978138 100.00 % 768489069 100.00 % 768489069 100.00 %
General Reads 1458894938 94.92 % 730772211 95.09 % 728122727 94.75 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 60138284 3.91 % 30122018 3.92 % 30016266 3.91 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17944916 1.17 % 7594840 0.99 % 10350076 1.35 %
Bisulfite_reads C2T 772353827 50.25 % 386799620 50.33 % 385554207 50.17 %
Bisulfite_reads G2A 746679395 48.58 % 374094609 48.68 % 372584786 48.48 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 558331262
Average Unique 72.65 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 76343718427 39.42 % 35668823470 36.84 % 40674894957 42.01 %
Base Counts Overall C 20022298454 10.34 % 868239827 0.90 % 19154058627 19.78 %
Base Counts Overall G 20665104736 10.67 % 19503002556 20.14 % 1162102180 1.20 %
Base Counts Overall T 75009782273 38.73 % 40002735905 41.31 % 35007046368 36.15 %
Base Counts Overall N 1618341498 0.84 % 786820936 0.81 % 831520562 0.86 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9941643443068658
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 642211090



Mapping Quality

Mapping Quality Histogram
A54767_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54767_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7NYNANXX_6_1
C7NYNANXX_5_1
C7NH9ANXX_8_1