/cemt/mapping_coverage/A54767_3_lane_gembs
BACK
SAMPLE A54767_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1432070299 |
100% |
155984737015 |
100% |
| Mapped |
1419528448 |
99.12 % |
154417005640 |
98.99 % |
| Passed |
1019474469 |
71.19 % |
104410258265 |
66.94 % |
| NotPassed |
400053979 |
27.94 % |
50006747375 |
32.06 % |
| |
|
|
|
|
| LowMAPQ |
305243204 |
21.31 % |
38155400500 |
24.46 % |
| MateUnmapped |
12541851 |
0.88 % |
1567731375 |
1.01 % |
| Duplicate |
27398836 |
1.91 % |
3424854500 |
2.20 % |
| BadOrientation |
1466 |
0.00 % |
183250 |
0.00 % |
| LargeInsertSize |
52652 |
0.00 % |
6581500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
67357821 |
4.70 % |
8419727625 |
5.40 % |
| Unmapped |
12541851 |
0.88 % |
1567731375 |
1.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
127409389750 |
100% |
| Passed |
99299642931 |
77.94 % |
| Trimmed |
4530879518 |
3.56 % |
| Clipped |
322402437 |
0.25 % |
| Overlapping |
22676729048 |
17.80 % |
| LowQuality |
579735816 |
0.46 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |