/cemt/methylation/A54767_3_lane_gembs

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SAMPLE A54767_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26511043 14429725 54.43 %
NonRefCpG 329381 126879 38.52 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54767_3_lane_gembs_coverage_refCpG.png ./IMG//A54767_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54767_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54767_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54767_3_lane_gembs_quality_refcpg.png ./IMG//A54767_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54767_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6121640 12.27 % 1874733 5.83 % 135891 22.45 % 30189 9.42 %
Intermediate (0.3-0.7) 12942484 25.93 % 6577687 20.46 % 162872 26.90 % 70535 22.00 %
Methylated (0.7-1) 30842026 61.80 % 23693840 73.71 % 306673 50.65 % 219909 68.59 %
Median Methylation 0.790 0.840 0.700 0.830