/cemt/A54773_3_lane_gembs

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SAMPLE A54773_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1428397362 100.00 % 714198681 100.00 % 714198681 100.00 %
General Reads 1347837341 94.36 % 674876248 94.49 % 672961093 94.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 56287160 3.94 % 28177140 3.95 % 28110020 3.94 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24272861 1.70 % 11145293 1.56 % 13127568 1.84 %
Bisulfite_reads C2T 718436164 50.30 % 359724946 50.37 % 358711218 50.23 %
Bisulfite_reads G2A 685688337 48.00 % 343328442 48.07 % 342359895 47.94 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 503886772
Average Unique 70.55 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70668657124 39.27 % 32339064721 35.94 % 38329592403 42.59 %
Base Counts Overall C 18810385257 10.45 % 1001814493 1.11 % 17808570764 19.79 %
Base Counts Overall G 19724656037 10.96 % 18277717022 20.31 % 1446939015 1.61 %
Base Counts Overall T 69304346766 38.51 % 37627806050 41.81 % 31676540716 35.20 %
Base Counts Overall N 1470022428 0.82 % 742631520 0.83 % 727390908 0.81 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9891131295735512
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 581306851



Mapping Quality

Mapping Quality Histogram
A54773_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54773_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7NETANXX_4_2
C7NH5ANXX_1_1
C7HT9ANXX_1_1